Publications

A consensus statement on dual purpose pathogen surveillance systems: The always on approach

Helene-Mari van der Westhuizen, Srinidhi Soundararajan, Tamsin Berry, David Agus, Sergio Carmona, Philip Ma, Jessica Davis, Sarah Walker, Jolynne Mokaya, Stephen D. Bentley, Nick R. Thomson, John Silitoe, Andrew Singer, Ines Hassan, Romina Mariano, Megan Akodu, Gabriel Seidman, Nabihah Sachedina, Jonathan Edgeworth, Reshania Naidoo, Tariro Makadzange, Vladimir Choi, Renuka Gadde, Samuel V. Scarpino, Corinna Bull, Kumeren Govender, Belinda Ngongo, Hinda Ruton, Paul Pronyk, Kate Smolina, Henry Li, Dylan Barry, Sven Schaffer, Vanessa Moeder, George Gao, Derrick Crook, John Bell.

Transforming clinical microbiology with bacterial genome sequencing

Xavier Didelot, Rory Bowden, Daniel J. Wilson, Tim E. A. Peto and Derrick W. Crook

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe Wellcome Open Research 4:191

Hunt M, Bradley P, Lapierre SG, Heys S, Thomsit M, Hall MB, Malone KM, Wintringer P, Walker TM, Cirillo DM, Comas I, Farhat MR, Fowler PW, Gardy J, Ismail N, Kohl TA, Mathys V, Merker M, Niemann S, Omar SV, Sintchenko V, Smith G, van Soolingen D, Supply P, Tahseen S, Wilcox M, Arandjelovic I, Peto TEA, Crook DW, Iqbal Z. (2019)

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

Hunt M, Letcher B, Malone KM, Nguyen G, Hall MB, Colquhoun RM, Lima L, Schatz M, Ramakrishnan S, The CRyPTIC Consortium, Iqbal Z (2022) Genome Biology 23:147

Inclusion of minor alleles improves catalogue-based prediction of fluoroquinolone resistance in M. tuberculosis

Brankin AE, Fowler PW (2024) J Antimicrob Chemother AMR 5:dlad039

The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A new global standard for molecular diagnostics

Walker TM, Miotto P, Köser CU, Fowler PW, Knaggs J, Iqbal Z, Hunt M, Chindelevitch L, Farhat M, Cirillo DM, Comas I, Posey JE, Omar SV, Peto TEA, Suresh A, Uplekar S, Laurent S, Colman R, Nathanson CM, Zignol M, Walker AS, the CRyPTIC Consortium, the Seq&Treat Consortium, Crook DW, Ismail N, Rodwell TC (2022)

Catalogue of mutations in Mycobacterium tuberculosis complex and their association with drug resistance, 2nd ed

World Health Organisation (2023) Catalogue of mutations in Mycobacterium tuberculosis complex and their association with drug resistance, second edition ISBN: 978-92-4-008241-0

WHO

Catalogue of mutations in Mycobacterium tuberculosis complex and their association with drug resistance, 1st ed

World Health Organisation (2021) Catalogue of mutations in Mycobacterium tuberculosis complex and their association with drug resistance ISBN: 978-92-4-002817-3

WHO